Browse, create & edit the projects, experiments, microscopy products and subjects
Assign data permissions
View the WIB images upon upload
Launch the upload tool
Launch the data management tool.
Project search
Keyword search for the project information
Upload tool
Upload data to IRODS
Report information about the new data
Automated conversion to WIB images
Data management tool
Browse data by CCDB ID
Assign the data purpose ID (data role) to the data
Tag the data with the keywords and ontology terms
Cut and paste data files
Launch Cytoseg routines
Launch the WIB viewer
Detailed data registration
Create & edit the detailed microscopy product information including the anatomical description, imaging parameters, image 2D, reconstructions and segmentations.
Launch the upload tool
Launch the data management tool.
Image utilities
Downsampler – Efficiently convert and downsample the high resolution images
WIB creator - Create the WIB tiled images
Vcutter – Crop and downsample the IMOD volume data
Cutter – Slice the volume data as a 2D image
NCMIR data workflow
Browse, visualize , validate and archive data
A bridge between the data grid and the users
Utilize the super-computer cluster like triton for the intensive calculation
WIB
Supported formats
The tiled jpeg and png images(HTTP)
The tiled jpeg images (HTTP)
PPM (SRB or IRODS)
TIFF (SRB or IRODS)
TIFF folder (SRB or IRODS)
IMG (SRB or IRODS)
DM3 (SRB or IRODS)
PNZ (HTTP)
IMOD - .st, .rec, .mrc (SRB or IRODS)
Analyze 7.5 (SRB or IRODS)
Features
Ontology annotation
Zoom or pan high resolution images
Enable or disable color channels
Adjust the brightness
Adjust the contrast (auto-adjusted)
Sharing the WIB view with the collaborators
Overlay with the Allan brain atlas
Cytoset beta 1.0.0
Support format(s)
TIFF images
Generate the automatic segmentation of 3D biological datasets, with emphasis on 3D electron microscopy
Redistribution and use in source and binary forms are permitted
provided that the above copyright notice and this paragraph are
duplicated in all such forms and that any documentation,
advertising materials, and other materials related to such
distribution and use acknowledge that the software was developed
by the CCDB. The name of the
University may not be used to endorse or promote products derived
from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR
IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.